
We develop a special technique to predict the tertiary structures for proteins. Our method is based on counting the topology or bond connection information between each chemical bond in proteins. Each protein is treated like a topological tree with numerous branches connected. The coordinates of the unknown protein is then built through the topology counted in which the desired information of bond length, bond angle, and dihedrals are extracted from proteins of known structures and close sequence homology. We provide the prediction of tertiary protein structures and confirm the precision of prediction results.
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